I tried reaching out to support and their response to this question was to link the MK3 troubleshooting guide and say to provide more information. I'm not sure what information they need, so I decided to ask here.
I have a Komplete Kontrol S88 MK2 which I am trying to use in stand alone midi mode. I also have two M-Audio SP2 sustain pedals. When connected to a Windows PC it works fine, however, when trying to use it in standalone mode, I cannot get the sustain pedals to work. When a sustain pedal is plugged into the Pedal A connection, I get a constant stream of CC12 updates on Midi channel 1. Adjusting the pedal seems to adjust the frequency of these messages, but it does not ever send anything on CC64 as documented in the User's Manual.
I have done the following:
1. Followed the instructions here https://support.native-instruments.com/hc/en-us/articles/115005166305-How-to-Configure-Sustain-Expression-Pedals-on-Kontrol-Keyboards?input_string=komplete+kontrol+s88+sustain+pedal+in+stand+alone+mode.
2. Powered everything off
3. Removed the USB cable and connected the Midi Out to Midi In on my synth
4. Powered on the S88
5. I have tried with both pedals plugged in. Pedal B seems to output an on/off message on CC66.
6. I have tried with no pedals plugged in. No messages are emitted from the S88
7. Pedal plugged into only Pedal A (CC12 continuously emitted)
8. Pedal plugged into only Pedal B (CC66 message only on pedal state change).
I have also tried holding down the shift and midi buttons while power on, as described here: https://support.native-instruments.com/hc/en-us/articles/210264145-How-to-Switch-Your-Native-Instruments-Controller-to-MIDI-Mode?input_string=komplete+kontrol+s88+sustain+pedal+in+stand+alone+mode. That has not made any difference.