I just installed user presets to the NI Resources folder, for Keyscape (3rd party). Rescanned everything and now I can see Keyscape and nothing else. Had all my Komplete and 3rd party except the Keyscape before. Halp.
Nevermind, I just figured out the factory/user library toggle. Seriously bad UI. You have to click in two places, and why not just keep everything together? Really dumb.
If you are somewhat ok with creating a few custom files or making basic edits in the windows registry/macOS plist directory you can setup a custom "user" folder which you can add all 3rd party libraries into and then have this imported into the factory library to have all libraries available in one spot.
See this blog: